University of Arkansas Installing Supercomputer; 'Star of Arkansas' to Be State's Fastest
Published on March 1, 2008
Scientists and engineers at the University of Arkansas will soon be able to conduct complex research projects using a new supercomputer system, dubbed the "Star of Arkansas." Once it is installed later this spring, the Star of Arkansas will be the fastest and most powerful computer in the state, allowing researchers to design vastly more complicated experiments, models and simulations than previously possible. The supercomputer will let scientists and engineers push the boundaries of knowledge in subjects ranging from bird flu to weather prediction.
The purchase of the Star of Arkansas was funded in part with an $803,306 grant from the National Science Foundation, with substantial matching funds from the University of Arkansas, and in partnership with Dell Corp. The supercomputer arrived on campus on Feb. 5, and Dell technicians will install the system later this month. The university's high-performance computing staff and researchers will then spend several weeks testing and evaluating the system.
"Science has reached the point where the key discoveries are possible only by studying extremely complex systems," said Amy Apon, who directs high-performance computing at the university. "These discoveries increase knowledge, of course, but they also fuel economic development. The Star of Arkansas is essential to the future of both the university and the state of Arkansas."
Stan Ahalt, executive director of the Ohio Supercomputer Center, recently served as an external adviser to the state of Arkansas in the area of the resources and the personnel needed to support supercomputing in the state.
"Computer simulation and modeling, using computers like the Star of Arkansas make the impossible possible," said Ahalt. "These techniques give scientists the opportunity to 'see' and study things that cannot otherwise be seen or studied."
For example, some things are too small, such as molecules, atoms, or quarks; others, too large, like galaxies or even the universe. Some processes, like photosynthesis are too fast, while geological processes, for example, are too slow. Weather and climate are too complex to study except with computer simulation, while experiments involving toxic materials, viruses or earthquakes are a lot safer when scientists use a computer model instead of the real thing. No scientists would be allowed to experiment with actual economies or traffic systems, but they can try anything with a computer simulation, without harming anyone in the real world. Finally, most researchers don't have access to a multi-billion dollar particle accelerator, but with a supercomputer they can simulate the outcomes.
"Practically speaking," said Ahalt, "the Star of Arkansas has the potential to improve Arkansas' economic future through research in areas such as natural gas production, bird flu prevention, rice irrigation, nanotechnology, large-scale transportation and commerce systems, material design, sustainability, and personalized medicine."
The Star of Arkansas is the university's second supercomputer. The Red Diamond supercomputer was installed in 2005, and will continue to be available to researchers. The Star of Arkansas is approximately 8 times faster than the earlier supercomputer, and can hold more than five times the amount of data stored in the entire Library of Congress.
Like Red Diamond, Star will be connected to the Arkansas Research and Education Optical Network, making it accessible to scientists and engineers in Arkansas and the region to collaborate with university researchers. In addition, the supercomputer and optical network enable collaborative courses in high-performance and grid computing, as well as seminars and academic courses, attracting new users and building computational expertise in the region. The Star of Arkansas will also be used to teach undergraduate and graduate students how to perform complex modeling and simulations.
The names, Star of Arkansas and Red Diamond, were chosen as symbols of the state of Arkansas in the realm of new discoveries in science and engineering. Arkansas is the home of the world's only public diamond mine and the eighth largest diamond repository in the world. The Star of Arkansas is the name of one of the largest diamonds found in the state. The color red represents both the University of Arkansas school colors and the Arkansas state flag, which boasts a diamond on a red background.
Video of the Star of Arkansas being delivered to the University of Arkansas can be viewed on You Tube at http://www.youtube.com/watch?v=Ki8zQu6R7SA .
Technical information
The Star of Arkansas supercomputer is built from 157 compute nodes, each with dual quad-core Xeon E5430 processors, 2x6MB cache, 2.66GHz, 1333FSB. There are a total of 1,256 cores, and each core has 2GB of memory. Performance on supercomputers is measured in "flops," or floating point operations per second. The theoretical peak performance of Star is 13.36Tflops, or 13.36 trillion floating point operations each second.
In comparison, Red Diamond has 256 cores and a theoretical peak performance of 1.638Tflops, with a measured sustained performance of 1.349Tflops.
The Star of Arkansas supercomputer is interconnected with an InfiniBand network that runs at 10Gbps, or 10 billions bits of information every second. The IB switch is from Qlogic and has expansion capacity up to 256 slots, of which only about 160 are used in the current configuration. With this switch additional compute nodes can be purchased incrementally and added to the cluster as additional hardware funds become available. The cluster is interconnected with an additional Gigabit Ethernet network for NFS access, and another Gigabit Ethernet network for management.
The Star of Arkansas has two file systems to handle computational and data-intensive applications. The NFS file system will be used for permanent storage and consists of 4TB of raw disk storage, or more than 4 trillion characters of data. The Lustre file system is used for fast temporary storage. The storage for Lustre comes from Data Direct Networks and includes 21 TB of raw disk storage. In addition, 50 nodes have local storage of 1TB, and 107 nodes have local storage of about 320GB, more than 320 billion characters of data. The total amount of storage potentially available on Star is more than 109TB. In comparison, the Library of Congress has estimated that it stores 20TB of text.
Contact:
Amy Apon, Professor, Computer Science and Computer Engineering
College of Engineering
(479) 575-6794, aapon@uark.edu
Jeff Pummill, Sr. Administrator, High Performance Computing
Graduate School
(479) 575-4590, jpummil@uark.edu
Reference Article: UofA College of Engineering Web Page
Arkansas Joins the Coalition for Academic Scientific Computation
Published on December 10, 2007
The University of Arkansas is taking another step in its
committment
to high performance computing by becoming the newest member of the
Coalition of Academic Scientific Computation (CASC). CASC is
an
organization of leading academic institutions with the mission of
promoting the use of high performance computing and communications
technology to increase national competitiveness, improve workforce
training, advance economic development, and enhance education.
By joining CASC, the University of Arkansas joins 50 peer institutions
in its promotion of supercomputing, or the use of computational tools
and techniques for scientific discovery and innovation. A
recent article
in the Washington Post emphasizes the importance of fast
computers for scientific discovery and innovation.
Supercomputers are a tool that make science possible that would
otherwise be impossible, from the understanding of the smallest of
possible materials, such as those found in the study of nanotechnology,
to the understanding some of the largest and most complex processes in
our universe, such as those found in global climate change.
For more information about CASC visit the website at http://www.casc.org/
The complete list of CASC members is available at http://www.casc.org/members.html
New NSF Grant for Supercomputer
Published on September 17, 2007
The University of Arkansas has received an $803,306 Major Research Instrumentation grant (MRI #072265) from the National Science Foundation to purchase and assemble the university's second supercomputer. The new machine will be among the fastest supercomputers in all U.S. academic institutions.
The computer will enable new and ongoing projects in computer science, physics, chemistry and other areas. Perhaps more importantly, by connecting to networks and other high-performance computers, the supercomputer will significantly augment the state's computing infrastructure and facilitate collaboration among researchers at other institutions within the University of Arkansas System.
Although many technical specifications have not yet been determined due to the possibility of harnessing imminent and significant improvements in computer-processing technology, the new machine will operate at a speed of at least six teraflops, approximately four times faster than Red Diamond, the university's first supercomputer.
OU Lecture: "Supercomputing in Plain English"
Published on October 01, 2007
The OU Supercomputing Center for Education & Research
(OSCER) is providing a lecture series entitled "Supercomputing in Plain
English" via various transmission methods as part of an effort to
educate both current and potential users to the intricacies of High
Performance Computing. University of Arkansas members may participate
in the lectures via Access Grid in Mullins Library room 225.
Titles for the lectures include "Stupid Compiler Tricks" and "The
Tyranny of the Storage Hierarchy" among others. The complete
lecture schedule is available at http://oscer.ou.edu/education.php.
For more information on how you may participate in this series contact
Jeff Pummill at <jpummil@uark.edu>.
The lecture series is provided through a CI-TEAM grant from the
National Science Foundation to the University of Oklahoma in which the
University of Arkansas is a partner.
HPC Class over AREON Network
Published on February 02, 2007
Students in six classrooms around the nation and the world are
receiving
instruction simultaneously via computer and high-definition television.
The new Arkansas Research and Education Optical Network (AREON) was
launched in December, connecting the UA and the state through a fiber
optic network, which links to both regional and national optical
networks. The classroom demonstration gives technology students and
researchers a test bed to try out the technology, said Amy Apon, UA
Computer Engineering and Computer Science professor. The UA received
their first lecture from Dr. Thomas Sterling, a professor at Louisiana
State University, in January. In "Introduction to High Performance
Computing," 12 students at the UA are participating in a live lecture
that originates at LSU. The technology allows the students to
ask questions and receive answers in real time.
Last updated: March 1, 2008