Free, non-credit course now offered via BlackBoard!
A true introduction to the Linux operating system via the command line just like you will use when interacting with the HPC systems. Overview of the commands a typical HPC user would utilize in a session, practical uses, options, etc.
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Follow-on to the Linux 101 class (working knowledge of command line Linux REQUIRED to take this workshop). HPC system directory structure, quotas, creating scheduler scripts, running jobs, evaluating log files, file management, etc.
Intro to de novo Assembly
Workshop will focus on steps necessary to perform a de novo genome assembly of a small organism using NGS data. It is the process of building a genome from scratch, or, without a reference genome.
- Mac or Linux laptop
Windows laptop with the following installed (on desktop is fine):
- PuTTY: http://the.earth.li/~sgtatham/putty/latest/x86/putty.exe
- PSPC: http://the.earth.li/~sgtatham/putty/latest/x86/pscp.exe
- Ability to connect to UARK WiFi. UARK Guest WiFi WILL NOT support our software tools.
- HPC Account: Please request an account prior to your training.